PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G109100.1.p
Common NameGLYMA_15G109100, LOC100795931
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 288aa    MW: 32164.1 Da    PI: 9.2981
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G109100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-3380133255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH++Fv+av++LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Glyma.15G109100.1.p  80 PRLRWTPDLHRCFVHAVQRLGGENRATPKLVLQLMNVKGLTISHVKSHLQMYRS 133
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.23576136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-3276135IPR009057Homeodomain-like
SuperFamilySSF466893.94E-1678134IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2480133IPR006447Myb domain, plants
PfamPF002491.6E-981132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKKGEKAQSE SSLKRSPPST MSSSSSSLIT TVVVHNNNNN NPSQPSELRA TTRCCFGSHH  60
LPDISLKTPM ARPYVRSKMP RLRWTPDLHR CFVHAVQRLG GENRATPKLV LQLMNVKGLT  120
ISHVKSHLQM YRSMRHEQMS QGAKKNDMAP DFLASTLSTL GQRQQNPHKR SCTEELVPTQ  180
AQWNHDEQEC HNGNQGGESI IIYNGNEQKV HSYIIFEGLL RGQSVQENKT TTPEKVSLGD  240
AGDERDHQRF QDTLSLSMSS RPSSHSFLNR SHTGPDANDV SLELTLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-1981136358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1981136358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1981136358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1981136358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1981136459Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G109100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-57AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597590.10.0putative Myb family transcription factor At1g14600
RefseqXP_028203759.10.0putative Myb family transcription factor At1g14600
TrEMBLA0A0R0FZ580.0A0A0R0FZ58_SOYBN; Uncharacterized protein
TrEMBLA0A445GS060.0A0A445GS06_GLYSO; Putative Myb family transcription factor
STRINGGLYMA15G11576.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93812840
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-33G2-like family protein