PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G123100.2.p

Common Name

GLYMA_15G123100, LOC100786925

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 329aa MW: 35520.9 Da PI: 6.9156

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G123100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.7e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Glyma.15G123100.2.p 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.134	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-18	47	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-32	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MYHSKNVPSA SLIGGNSLSH GQHIDCGGST MDPGSGGNGL SNNSNLTSKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK 120 ETGDMLSNLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ 180 RLSGVLSEAP GSGAVAVVPG DACQEPDNKT DPSTPDPEKA AKDRAPAKSL SIESFSSHPE 240 PMTPDSGCHV GSPAESPKGE RSAKKQRVTM DGVYSKPEMV LPHQILESSM SSYQQPNTVF 300 LGQEQFDPSL DISTKSDEEL VKIGGGNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5788	0.0	cotyledon\| hypocotyl\| root\| somatic embryo

Function -- GeneRIF ? help Back to Top
Overexpressing GmPHR25 increased inorganic phosphorus concentration in transgenic soybean hairy roots under normal conditions, accompanied with a significant decrease in hairy root growth.[PHR25] [PMID: 28992334]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G123100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095294	0.0	BT095294.1 Soybean clone JCVI-FLGm-7I11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014623430.1	0.0	MYB-CC domain-containing transcription factor PHR25 isoform X2
Refseq	XP_028204938.1	0.0	myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	1e-120	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0R0GAR9	0.0	A0A0R0GAR9_SOYBN; Uncharacterized protein
TrEMBL	A0A445GSJ5	0.0	A0A445GSJ5_GLYSO; Myb family transcription factor PHL7 isoform D
STRING	GLYMA15G12940.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-96	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G123100.2.p
Entrez Gene	100786925

Publications ? help Back to Top
Xue YB, et al. GmPHR25, a GmPHR member up-regulated by phosphate starvation, controls phosphate homeostasis in soybean. J. Exp. Bot., 2017. 68(17): p. 4951-4967 [PMID:28992334]