PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G129900.4.p
Common NameGLYMA_15G129900, LOC100809036
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 175aa    MW: 19910.4 Da    PI: 9.6371
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G129900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.2e-3179135158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rak+e+ekk  +++rkpylheSRh hAlrR+Rg+gGrF
  Glyma.15G129900.4.p  79 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 135
                          69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.0E-3577138IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.41678138IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.5E-2780135IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-2381103IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686083103IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.6E-23112135IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKLMSSSSRN HKCSIYLQME FLMQVPPTYP YPDPYYRSIF APYDAQTYPP QPYGGNPMVH  60
LQLMGIQQAG VPLPTDTVEE PVFVNAKQYH GILRRRQSRA KAESEKKAAR NRKPYLHESR  120
HLHALRRARG CGGRFLNSKK DENQQDEVAS TDESQSNINL NSDKNELAPS DRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2078143166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G129900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1460241e-136BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBankJQ9182711e-136JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597658.11e-129nuclear transcription factor Y subunit A-7 isoform X2
RefseqXP_014623583.11e-129nuclear transcription factor Y subunit A-7 isoform X2
RefseqXP_028203934.11e-129nuclear transcription factor Y subunit A-7-like isoform X3
RefseqXP_028203936.11e-129nuclear transcription factor Y subunit A-7-like isoform X3
SwissprotQ84JP12e-62NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0R0GAY31e-127A0A0R0GAY3_SOYBN; Uncharacterized protein
STRINGGLYMA15G13660.21e-109(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-48nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]