PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G153900.1.p
Common NameGLYMA_15G153900, LOC100794513
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 145aa    MW: 16419.4 Da    PI: 5.8566
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G153900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.62.1e-5420115297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPianv+r+mk++lP+nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf++y+ep++ yl++yr
  Glyma.15G153900.1.p  20 KEQDRLLPIANVGRLMKRILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDNYAEPMRRYLHRYR 109
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+e ++
  Glyma.15G153900.1.p 110 EVEVDH 115
                          **9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.0E-5215131IPR009072Histone-fold
SuperFamilySSF471133.87E-3922129IPR009072Histone-fold
PfamPF008084.8E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.6E-195371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.6E-197290No hitNo description
PRINTSPR006153.6E-1991109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEDIGGSSSN DNNNNGGIIK EQDRLLPIAN VGRLMKRILP QNAKISKEAK ETMQECVSEF  60
ISFVTSEASE KCRKERRKTV NGDDICWALA TLGFDNYAEP MRRYLHRYRE VEVDHNKVNL  120
QEKGNSPEEK DDELFKLSNR GVGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4519110192Transcription factor HapC (Eurofung)
4g92_B1e-4519110192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G153900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150356e-89AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598369.11e-104nuclear transcription factor Y subunit B-5
RefseqXP_028202074.11e-104nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0B2QKX11e-102A0A0B2QKX1_GLYSO; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0R0G1861e-102A0A0R0G186_SOYBN; Uncharacterized protein
STRINGXP_004508609.12e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.19e-56nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]