PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G166800.2.p
Common NameGLYMA_15G166800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 226aa    MW: 25663.5 Da    PI: 6.5237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G166800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-145497755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A++YI++L+
  Glyma.15G166800.2.p 54 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQHLH 97
                         57*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.9394796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1848113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1350101No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1753112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-125496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MENIGEEYKH YWETNMFLQT QELGSWGLDE ALSGYYDSSS PDGAASSAAS KNIVSERNRR  60
KKLNERLFAL RSVVPNISKM DKASIIKDAI DYIQHLHEQE KIIQAEIMEL ESGMPKKSPS  120
YDFEQELLPV VLRSKKKRTE QLYDCVTSRN SPIEVLELRV THMGEKIVVV SLTCSKRTDT  180
MVKLCEVFES LKLKIITANI TSFSDRLLKI VFIEVSLLTC SSFPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.551030.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G166800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312690.0KT031269.1 Glycine max clone HN_CCL_85 bHLH transcription factor (Glyma15g18070.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546437.11e-157transcription factor bHLH35
RefseqXP_028203644.11e-157transcription factor bHLH35-like
SwissprotQ2HIV95e-83BH035_ARATH; Transcription factor bHLH35
TrEMBLI1MH421e-165I1MH42_SOYBN; Uncharacterized protein
STRINGGLYMA15G18070.11e-157(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-76bHLH family protein