PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G186300.2.p
Common NameGLYMA_15G186300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 448aa    MW: 49214.3 Da    PI: 6.6377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G186300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.6e-23201254359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+ kg+++pr+YYrC++   Cpv    +r+ +d++v+++tYeg+Hnh+
  Glyma.15G186300.2.p 201 DGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPV----QRCFKDETVLITTYEGNHNHP 254
                          9**************************989995....67999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-24184256IPR003657WRKY domain
SuperFamilySSF1182902.35E-21193256IPR003657WRKY domain
PROSITE profilePS5081122.343194256IPR003657WRKY domain
SMARTSM007741.8E-26199255IPR003657WRKY domain
PfamPF031061.3E-19201254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEDKAAIKEL LEDEENPYDN TMGSTLLSLS LNNSGQPLNQ MGMLRIKLEE AKKENEILKA  60
MLNQVNQHCT ALQNRILFEM QQHQLFSSSP RNDNNNHDLQ GNKQDAEKLP MLHTRQFLNM  120
GESSSILDGN TKACAIAENA EKKMLGKNLA CDDNKYNVEG EINSQITSHE AKSTEDQVSE  180
VTCRRARVSI RARSDFSSMF DGCQWRKYGQ KTAKGNPCPR AYYRCSMGTA CPVQRCFKDE  240
TVLITTYEGN HNHPLPPAAR PLASSTSAAL NMFLSGSITS SHSSTILPNS PLSTISPSTA  300
VATFSQNATC PTVTLDLTQP NNNNYLQFQS ATTSSQDHTQ SFFPLPLHGN PQNYSEGLMH  360
LWSKVPIPTM LAPEKNLALV DVVSEAINKD PSLKAALFSA ISSLTGDPDQ KDNINNISQL  420
HSKSSGGYDP CSKMPAIPPI QPYTKLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-18186258176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G186300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434642e-79BT143464.1 Lotus japonicus clone JCVI-FLLj-21J12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546540.10.0WRKY transcription factor 42
TrEMBLA0A0R0GBF60.0A0A0R0GBF6_SOYBN; Uncharacterized protein
STRINGGLYMA15G20990.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-47WRKY family protein