PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G232000.1.p
Common NameGLYMA_15G232000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 498aa    MW: 55125.4 Da    PI: 6.5207
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G232000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.8e-10210252345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Glyma.15G232000.1.p 210 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 252
                          568899************************9777776666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.5E-8202254No hitNo description
SMARTSM003382.1E-7208271IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415210254IPR004827Basic-leucine zipper domain
PfamPF001708.3E-7212252IPR004827Basic-leucine zipper domain
CDDcd147081.15E-20212264No hitNo description
SuperFamilySSF579598.13E-7212255No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
PfamPF141448.3E-33294369IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MTSRKNQNVI QQSHDSMLKE HTLSEGSSCQ ALADQGRGRY QESGILADQG RECYQESKTL  60
AARNYTEEST IDSFHVSDFG AFDQSYRIGD AVDLSGNPVY NSLKVNSQTI SPGSVHISSL  120
GQLPTSLEKS PLTNQIEPHR LRLQKVQSSN PGTILVGNTD NQEESAMADA SPRTDISTDG  180
DTDDKNQPYD RNEALAAVSD SSDRSKDKSD QKTLRRLAQN REAARKSRLR KKAYVQQLES  240
SRLKLTQLEQ ELQRARQHGI FISSSGDQAH TLSGNGAMQF DAEYARWLEE QNRQINELKA  300
AVNSHASDTE LRMIVDGILA HYDEIFRLKG VAAKADVFHL LSGMWKTPAE RCFLWLGGFR  360
SSELLKLLVS QLEPLTEQQL MGITNLQQSS QQAEDALSQG MEALQQSLAE TLSTGAPASS  420
GSSGNVANYM GQMAMAMGKL GTLEGFIQQA DNLRQQTLQQ MHRILTTRQS ARALLAIHDY  480
FSRLRALSSL WLARPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.369160.0cotyledon| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G232000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963110.0BT096311.1 Soybean clone JCVI-FLGm-25J1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546706.10.0transcription factor TGA6 isoform X2
RefseqXP_006598095.10.0transcription factor TGA6 isoform X2
RefseqXP_028203278.10.0transcription factor TGA6-like isoform X2
RefseqXP_028203279.10.0transcription factor TGA6-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0R0G5440.0A0A0R0G544_SOYBN; Uncharacterized protein
STRINGGLYMA15G37220.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-164TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]