PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G234100.1.p

Common Name

GLYMA_15G234100, LOC100793978

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 335aa MW: 37129 Da PI: 9.5605

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G234100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.3	1.5e-16	49	135	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k e+++kry+ + + ++ +ss++p++++l+ Glyma.15G234100.1.p 49 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARHVsaraNCTKSPKTSTQCKNKVESMKKRYRSESAATADH---ASSSWPLYSRLD 135 5***********************************85444455556678*****************97...6778***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-19	47	135	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGVVEQEMEE EEKEKHTNNH NHPSSLHPIK EECVSVRKPF SGDRVKRDEW SEGAVSTLLE 60 AYEAKWVLRN RAKLKGHDWE DVARHVSARA NCTKSPKTST QCKNKVESMK KRYRSESAAT 120 ADHASSSWPL YSRLDLLLRG TGPVLSSPPP PPAMMPAAMP VLSPVEPSQP PQLSPPPAAP 180 SGPLANAQNS HGSNGIDEKL AKEDGLGTKS SDQVSSKNPL DTDSSTPALY SKKDGLRCNK 240 RKKKTIDNTG RRRKECVEIA ESLRWLTEAM IRSEQARMDT MKEIERMRVE AEAKRGEMDL 300 KRTEIIANTQ LEIARIFASV NNKGVDSSLR IGRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	253	KRKKKTIDNTGRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G234100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160455	1e-177	AC160455.26 Glycine max cultivar Williams 82 clone gmw2-10n21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003545831.1	0.0	trihelix transcription factor ASIL1
TrEMBL	K7MDE3	0.0	K7MDE3_SOYBN; Uncharacterized protein
STRING	GLYMA15G37451.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50
Representative plant	OGRP4409	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-100	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Glyma.15G234100.1.p
Entrez Gene	100793978