PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G258100.1.p
Common NameGLYMA_15G258100, LOC100790989
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 179aa    MW: 19836.6 Da    PI: 8.2117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G258100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.91.1e-45131121100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C++dC++apyfpa++p+kf  vhk+FGasnv k+lk+lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l
  Glyma.15G258100.1.p  13 PCAACKLLRRRCTPDCAFAPYFPADEPQKFDSVHKVFGASNVNKMLKELPEHQRSDAVSSMVYEAKARVRDPVYGCVGAISSLQQQVDVL 102
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++lal+++e
  Glyma.15G258100.1.p 103 QTQLALAQAE 112
                          *****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.94612113IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKESGRKQGT MSPCAACKLL RRRCTPDCAF APYFPADEPQ KFDSVHKVFG ASNVNKMLKE  60
LPEHQRSDAV SSMVYEAKAR VRDPVYGCVG AISSLQQQVD VLQTQLALAQ AEVVHMRMRQ  120
FSPLSDQQQQ PSVLPEASNA SSENLYHSSR LLSSQTKSLF SMDMVVDQAN MGQSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5091147112LOB family transfactor Ramosa2.1
5ly0_B2e-5091147112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.378230.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G258100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0978640.0BT097864.1 Soybean clone JCVI-FLGm-16M12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241363.11e-131uncharacterized protein LOC100790989
RefseqXP_028202173.11e-131LOB domain-containing protein 4-like
SwissprotQ9SHE93e-68LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A445GYE81e-129A0A445GYE8_GLYSO; LOB domain-containing protein 4
TrEMBLC6TJL61e-129C6TJL6_SOYBN; Uncharacterized protein
STRINGGLYMA15G41020.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-61LOB domain-containing protein 4