PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G263700.10.p
Common NameGLYMA_15G263700, LOC100807793
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 375aa    MW: 41531.4 Da    PI: 8.4662
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G263700.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-333589155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Glyma.15G263700.10.p 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3473292IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-323290IPR009057Homeodomain-like
SuperFamilySSF466891.74E-163490IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-233590IPR006447Myb domain, plants
PfamPF002491.2E-73787IPR001005SANT/Myb domain
PfamPF143795.1E-19131171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MERMFPPKKP STMNSHDRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SIKDGMRASA LELQRNTASS  120
SAMIGRNMNE MQIEVQRRLH EQLEQVQKHL QLRIEAQGKY MQSILEKAYQ TLAGENMASA  180
ATNLKGAIVP HHQGIPDMGV VMKEFGSPLG FSSFQDLENI YGGDQIDLQQ NMEKPPLDHG  240
FMPINETLCL GKKRSNNPYS GSGKSPLIWS DDLRLQDLGG PASSCLGPQD DPFKGDQIQI  300
APPGSLDRGA STDIDPMSEI YDSKPVLQSE EKKFDASSMK LERPSPRRAP LQAERMSPMI  360
STGTMAQGRG SPFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.524890.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed in the developing protophloem sieve elements soon after the phloem-specific cell divisions have taken place. Also found in the companion cells and metaphloem sieve elements. May not be necessary for the initial steps of protophloem differentiation. {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061}.
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots, specifically in the developing protophloem sieve elements (PubMed:14614507). Detected in phloem and/or cambium (PubMed:15923329). Expressed in the phloem tissues of various organs, including leaves and cotyledons, during vegetative growth (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:26239308}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G263700.10.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3434570.0HQ343457.1 Lotus japonicus cultivar MG-20 IPN2 (IPN2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598224.10.0MYB-CC domain-containing transcription factor PHR27 isoform X5
SwissprotQ9SAK51e-123APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0R0GFZ70.0A0A0R0GFZ7_SOYBN; Uncharacterized protein
STRINGGLYMA15G41740.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-125G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]