PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G273000.1.p
Common NameGLYMA_15G273000, LOC100788886
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 454aa    MW: 51138.1 Da    PI: 5.1564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G273000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07424425
                         ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                         + C+f+ar G C  Gd+C FaH
  Glyma.15G273000.1.p  4 RVCKFYAR-GACLKGDQCDFAH 24
                         68******.************* PP
2zf-CCCH25.42.5e-082750226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k  +C+++ + G C yG+rC++ H+
  Glyma.15G273000.1.p 27 KDDICSYYKK-GSCAYGSRCRYKHV 50
                         6679**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.695124IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-52549IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8122552IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-62750IPR000571Zinc finger, CCCH-type
SMARTSM003560.00412751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-52849IPR000571Zinc finger, CCCH-type
SMARTSM0035664121145IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.39125146IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.33E-13177257No hitNo description
Gene3DG3DSA:3.30.40.101.9E-10181252IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.73E-4187252No hitNo description
PROSITE profilePS5008911.914188251IPR001841Zinc finger, RING-type
PfamPF000971.9E-7188250IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.2E-5188250IPR001841Zinc finger, RING-type
PROSITE patternPS005180212221IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.619280309IPR000571Zinc finger, CCCH-type
SMARTSM003560.34280308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSNRVCKFYA RGACLKGDQC DFAHEKKDDI CSYYKKGSCA YGSRCRYKHV KASQASSSAN  60
GRHSPVLDPV VNHTIKGTSS WVPKAVKSSS SDKRARSSQQ KNLPSLENDV GQSSTSSVIP  120
SEHLFCAFAA ANCPLEDKCS RIHGNQCLYC RKFCLHPTDR KEKENHLRTC EKKEKYLQAL  180
KDSQEVECNV CLERVLSKPK PADCKFGLLP ECDHAFCLSC IRNWRNSAPT SGMDISNAGT  240
ANTVRTCPVC RKLSYFVIPS GIWYSTKEEK QEIIDNYKAN CKLIDCKHFN FGNGNCPFGA  300
SCFYKHTVKP GSYTWIHHRP PPQRRQNHFD VHDMLNMLQD VDLTSAEYFS IMRDSDLYDD  360
MDPFEMMVSD RLAGDSGPCL GPFDSDEEDL DIFQMAALSE VLASGVDDFG PEDFGDEDFN  420
PMEAALLSMM IHSNMEDEDD DDDEEEEYSD EDY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.186530.0hypocotyl| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G273000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546880.10.0E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-103C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLI1MJM70.0I1MJM7_SOYBN; Uncharacterized protein
STRINGGLYMA15G42820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-101C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]