PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G004300.1.p

Common Name

GLYMA_16G004300, LOC100812983

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 362aa MW: 38250.4 Da PI: 7.3189

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G004300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.3	4.6e-41	24	127	4	113
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Glyma.16G004300.1.p 24 PKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNVSLRSSGSTLSAPpsks 113 699****************************************************************99977788888877554444333 PP TCP 89 .......kaaksaakskksqksaasalnlake 113 + l+la++ Glyma.16G004300.1.p 114 aphtfhgA------------------LALAHH 127 33333330..................333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-39	27	149	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	28	82	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MKKLTGGASS PASSSSLAIP TANPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG 60 HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSSLNVSLR SSGSTLSAPP SKSAPHTFHG 120 ALALAHHPYE EAFQHPALLG FHPHAHQPQQ LLSADHIPES LPSGAGDSGD NYLRKRYRED 180 LFKDDNINNN NTQSQNESGD GDGSSPKLPK QQSEAGSGLL RPSNLLPATA MWAVAPSPAS 240 GPPGSTIWML PVTAGASSSA SSETQMWPFP QSVSGFMPRF NLPVPGALEF QGARAGSLQL 300 GSMSMPQQQH LGLAMSDSNL GMLAALNAYT RASLNVNSDH HQHQHQSQPS ESGEDDPNSS 360 Q*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MKKLTGGASS PASSSSLAIP TANPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG  60
HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSSLNVSLR SSGSTLSAPP SKSAPHTFHG  120
ALALAHHPYE EAFQHPALLG FHPHAHQPQQ LLSADHIPES LPSGAGDSGD NYLRKRYRED  180
LFKDDNINNN NTQSQNESGD GDGSSPKLPK QQSEAGSGLL RPSNLLPATA MWAVAPSPAS  240
GPPGSTIWML PVTAGASSSA SSETQMWPFP QSVSGFMPRF NLPVPGALEF QGARAGSLQL  300
GSMSMPQQQH LGLAMSDSNL GMLAALNAYT RASLNVNSDH HQHQHQSQPS ESGEDDPNSS  360
Q*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.7638	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G004300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-132	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548679.1	0.0	transcription factor TCP8
Refseq	XP_028208007.1	0.0	transcription factor TCP8-like
Swissprot	Q9C518	4e-82	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A445GCG7	0.0	A0A445GCG7_GLYSO; Transcription factor TCP8
TrEMBL	I1MJW9	0.0	I1MJW9_SOYBN; Uncharacterized protein
STRING	GLYMA16G00580.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-68	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.16G004300.1.p
Entrez Gene	100812983

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]