PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G007100.2.p
Common NameGLYMA_16G007100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 262aa    MW: 29835.7 Da    PI: 8.4971
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G007100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-1558102147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
  Glyma.16G007100.2.p  58 RGHISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 102
                          5666899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071776754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-63255IPR009057Homeodomain-like
SuperFamilySSF466891.58E-2037112IPR009057Homeodomain-like
PROSITE profilePS500904.1823952IPR017877Myb-like domain
PROSITE profilePS5129424.66353107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2356107IPR009057Homeodomain-like
SMARTSM007171.3E-1557105IPR001005SANT/Myb domain
PfamPF002494.1E-1458103IPR001005SANT/Myb domain
CDDcd001674.64E-1262103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKPSPNMFPS MEKENGRRLP KMQLFGCIYT IIMSAGLKRC GKSCRQRWLN YLKPGIKRGH  60
ISVDEEDMII RLHRLLGNRW ALIAKRLPGR TDNEIKNYWN TNLSKKLQKH PTSSVSSLQH  120
KRHEKEKTIQ MHVSPEAPRP RRVNAVEYSK NLENGGCGNR PSTTPSPSNK VEGSSEEASF  180
SDFLIHDIDQ NQFLIADDSN SKVPQMEEDH HHNNKVELIT NNSPSSSSPS DHCHHLLPEK  240
FDPFETLLDV ELASFLGFEN D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-21110721128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.355840.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G007100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981789.10.0transcription factor TT2 isoform X2
TrEMBLK7MEG70.0K7MEG7_SOYBN; Uncharacterized protein
STRINGGLYMA16G00920.11e-168(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-40MYB family protein