PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G010500.3.p
Common NameGLYMA_16G010500, LOC100815642
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 431aa    MW: 49271.2 Da    PI: 9.1963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G010500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08402423426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            Cr++ar G C yGd+CkF H+
  Glyma.16G010500.3.p 402 QVCRHYAR-GRCYYGDNCKFLHD 423
                          57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689065.13E-880125No hitNo description
Gene3DG3DSA:1.10.720.308.3E-980125IPR003034SAP domain
PROSITE profilePS5080010.16690124IPR003034SAP domain
PfamPF020371.1E-990124IPR003034SAP domain
SMARTSM005132.9E-490124IPR003034SAP domain
SuperFamilySSF902291.57E-7397423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.934398425IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6399424IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5402423IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-7402425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MATKNLPMEL HEITTEFEGS DPDSEWDDSK EDPDFDLLEE THSKFSILSL KHKAKARVVE  60
DKGLGEEVNA SAHDGENFQK VQKLIQVGPL EKLKVDECKL YLRKNGLRLT GNKDTLIQRI  120
KEHLDILNGG EKKYPPSSFV LNCKGDACTG DVVLFEQNVY EMFNIASRSA SGPPCGKRIV  180
AGRIVKESYG AAKQQHTFTK WEDEAKRQKI LMEKHSRGSL AREDREARMQ EKEKRKKIKE  240
NRVSKKDSAR NQSQSNSHIT RPQYQPQETN VPINPEKPEF PSRNSGLSAN IRKETSSIVH  300
KPAAVTGHHV DSKTLGRTSF TDNMHNQQAW STGDCRNISD IGHMRRGADH SAYYNYGDSH  360
FREKPTVILK YHHHYHHRMP LANANHSQQV LPDRESYDKQ KQVCRHYARG RCYYGDNCKF  420
LHDLRDKGNV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G010500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-48AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623988.10.0zinc finger CCCH domain-containing protein 62 isoform X2
RefseqXP_028206738.10.0zinc finger CCCH domain-containing protein 62-like isoform X2
TrEMBLA0A0R0FSJ90.0A0A0R0FSJ9_SOYBN; Uncharacterized protein
STRINGGLYMA16G01296.20.0(Glycine max)