PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G016600.1.p
Common NameGLYMA_16G016600, LOC100779816
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 432aa    MW: 49684.8 Da    PI: 4.6659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G016600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.92.6e-4251353128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +G+ F+Ptdeelv++yLk+k+ +++  + ++i +vd+++vePwdLp      +v+ + +ew+fFs+ d ky+++kr nr+tk g+Wk tg
  Glyma.16G016600.1.p   5 VGYGFRPTDEELVKFYLKHKLLDDDPCV-HFILDVDLCEVEPWDLPLlladsAVRFNGREWFFFSPVDYKYSNSKRVNRTTKCGFWKPTG 93 
                          699********************99777.89***************5466665556889******************************* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          kd+ + sk +++++g+kktLv+y+gr ++g+k++Wv+hey++
  Glyma.16G016600.1.p  94 KDRGIRSKdTNNVIGTKKTLVYYQGRVSSGVKSNWVIHEYHA 135
                          *******977778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.1173153IPR003441NAC domain
SuperFamilySSF1019417.98E-475153IPR003441NAC domain
PfamPF023651.6E-235134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDDIVGYGFR PTDEELVKFY LKHKLLDDDP CVHFILDVDL CEVEPWDLPL LLADSAVRFN  60
GREWFFFSPV DYKYSNSKRV NRTTKCGFWK PTGKDRGIRS KDTNNVIGTK KTLVYYQGRV  120
SSGVKSNWVI HEYHAVTFHE SQRTFVLCRL MKKPGKTTEG GTDALICDEG GPSRSMVSDY  180
ENQATTQGIP SGGTFTGMET TFQGMHLAEK YFSPTQQSPT GIEQEEPSFT NYPFNNAYFR  240
NEDNFMQTPF ETKEEDAFLN SIFVDENLVI NEESMHAFVN SSTQSESLRR VYCESSDTDA  300
EVVSERDDNI VDVSTMCNEY PNSDGYYSSE RFESSHGAVQ DSLCLLSTNH EANQETMESI  360
LQNNFWGMEQ SYCDSTANKP LEINYTEISS SPSTRRRWIN QYHPRPDYFT SQKTDEDLRH  420
RGRFQTMQYR M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-29615320165NO APICAL MERISTEM PROTEIN
1ut4_B2e-29615320165NO APICAL MERISTEM PROTEIN
1ut7_A2e-29615320165NO APICAL MERISTEM PROTEIN
1ut7_B2e-29615320165NO APICAL MERISTEM PROTEIN
3swm_A2e-29615323168NAC domain-containing protein 19
3swm_B2e-29615323168NAC domain-containing protein 19
3swm_C2e-29615323168NAC domain-containing protein 19
3swm_D2e-29615323168NAC domain-containing protein 19
3swp_A2e-29615323168NAC domain-containing protein 19
3swp_B2e-29615323168NAC domain-containing protein 19
3swp_C2e-29615323168NAC domain-containing protein 19
3swp_D2e-29615323168NAC domain-containing protein 19
4dul_A2e-29615320165NAC domain-containing protein 19
4dul_B2e-29615320165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.569250.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G016600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548387.10.0NAC domain-containing protein 76
TrEMBLI1MKA00.0I1MKA0_SOYBN; Uncharacterized protein
STRINGGLYMA16G01930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.34e-43NAC transcription factor-like 9