PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G016700.1.p
Common NameGLYMA_16G016700, LOC100780890
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 401aa    MW: 45291.2 Da    PI: 4.3466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G016700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.73.8e-3961383128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          +G+ F+Pt++elv++yLk+k+ g++ ++ +vi+ +d+++vePw+ p       +++ ++ +w+fFs+ d ky ++kr nr+tk g+Wkat
  Glyma.16G016700.1.p   6 VGLGFRPTEQELVNFYLKHKLLGDDPRV-HVIPVIDLCDVEPWNVPVilasssAIRFGDPDWFFFSPVDFKYLKSKRFNRTTKCGFWKAT 94 
                          6999*********************999.99***************64666655555889****************************** PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          gkd+++ +   +++++g+kktLv+y+gr + g+k++Wv+hey++
  Glyma.16G016700.1.p  95 GKDRDIRTGdtDNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHA 138
                          *******98667778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.1744156IPR003441NAC domain
PfamPF023652.3E-226137IPR003441NAC domain
SuperFamilySSF1019412.35E-426156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDDIVGLGF RPTEQELVNF YLKHKLLGDD PRVHVIPVID LCDVEPWNVP VILASSSAIR  60
FGDPDWFFFS PVDFKYLKSK RFNRTTKCGF WKATGKDRDI RTGDTDNTVI GTKKTLVYYQ  120
GRVSCGVKSN WVIHEYHAVT FHENQRTFVL CCLMKKPGKT TEGGTDPLIC DEGEPSRSMI  180
SDYENQPTAE GIASEGTFTG IEAIFQATPW AENCFSPIQQ SLTLIEQEGA SFPNYAFNNA  240
YFRNEDNIMQ TPFETTKEDE FLNLILADES IVINEENKHD FVNSSTQSES LKRVYCESSD  300
TDAEVISKLD DNIVDISTAC NDYPNSDEYY SSKRFKSSHD AVHGGICFLP SNLEANQEKN  360
ESMFQDSFWG AETSSCDSTL DKPLEINYID ISSSPFTPWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-26715620165NO APICAL MERISTEM PROTEIN
1ut4_B2e-26715620165NO APICAL MERISTEM PROTEIN
1ut7_A2e-26715620165NO APICAL MERISTEM PROTEIN
1ut7_B2e-26715620165NO APICAL MERISTEM PROTEIN
3swm_A2e-26715623168NAC domain-containing protein 19
3swm_B2e-26715623168NAC domain-containing protein 19
3swm_C2e-26715623168NAC domain-containing protein 19
3swm_D2e-26715623168NAC domain-containing protein 19
3swp_A2e-26715623168NAC domain-containing protein 19
3swp_B2e-26715623168NAC domain-containing protein 19
3swp_C2e-26715623168NAC domain-containing protein 19
3swp_D2e-26715623168NAC domain-containing protein 19
4dul_A2e-26715620165NAC domain-containing protein 19
4dul_B2e-26715620165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.128660.0hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G016700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598860.10.0NAC domain-containing protein 69
TrEMBLI1MKA20.0I1MKA2_SOYBN; Uncharacterized protein
STRINGGLYMA16G01940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-42NAC transcription factor-like 9