PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G017100.1.p
Common NameGLYMA_16G017100, LOC100781424
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 583aa    MW: 65550.7 Da    PI: 7.4897
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G017100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.92.6e-30195293193
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Glyma.16G017100.1.p 195 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 284
                          89***************************966667889*************************************************543 PP

                          SS.SEE..E CS
                   B3  86 gr.sefelv 93 
                          g+  + +l+
  Glyma.16G017100.1.p 285 GEsYRHRLY 293
                          444444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-41184302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-29191299IPR015300DNA-binding pseudobarrel domain
CDDcd100177.66E-26193294No hitNo description
PfamPF023629.4E-28195298IPR003340B3 DNA binding domain
SMARTSM010197.3E-23195300IPR003340B3 DNA binding domain
PROSITE profilePS5086314.24195298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MELMQEVKGY SDSREEEEEE EGAAEEESSR KHHYYPFSSS PSNLYLSSSS APSISSNYTS  60
TTTSAVARPL HHHHVINIPY QQNPWLGMNI VHHDHLIQSP ESHNSSSGLG LLHQHQDAAG  120
SNFIINNNQH HQHHHTTKQL DFMDLSLGSS KDEGNLPGSS SSVYAHHHAA SGSSSVNGNN  180
NLQQQQQPAE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSANEK GLLLNFEDRN  240
GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGVGESYRH RLYIDWKRRR  300
DHHHHHHHGP VDPSTTLFTP FFLPNQPHHL MSIRWGATDR LYSLPSPTPP RHHDHLQHQQ  360
PLNYNNNTMY HPFHHHGGGS GINGTTHHYN NYYHEMSSTT NTTTSGSGSV FYLRSTPPSM  420
PLADHQTLNT RQQQQQQQQQ QQQEGGGNVS LPPMIIDSVP VAHHLHHHHH QHQHQHQHHG  480
GKSSGSSSPS TAGKRLRLFG VNMECASSTT SEDHPKCFSL LSSSSSMANS NSSLPPLQLL  540
REDTLSSSAA AAARFGDQRG GVGEPSTSIF FDLDPSLQYR KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-631892992113B3 domain-containing transcription factor NGA1
5os9_B3e-631892992113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.340600.0cotyledon| leaf| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G017100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352930.0AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624616.10.0B3 domain-containing protein Os02g0683500 isoform X1
RefseqXP_014624617.10.0B3 domain-containing protein Os02g0683500 isoform X1
RefseqXP_014624618.10.0B3 domain-containing protein Os02g0683500 isoform X1
TrEMBLA0A445GCW50.0A0A445GCW5_GLYSO; B3 domain-containing protein isoform A
TrEMBLK7MEN30.0K7MEN3_SOYBN; Uncharacterized protein
STRINGGLYMA16G01951.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-66B3 family protein