PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G017700.2.p
Common NameGLYMA_16G017700, LOC100783582
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 351aa    MW: 39486 Da    PI: 7.9721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G017700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13136187155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.16G017700.2.p 136 QRMTHIAVERNRRRQMNDHLSVLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 187
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-12134191No hitNo description
PROSITE profilePS5088815.751135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-16135200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13136201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MPFLQMLQSV ESPQFFPLKE TNFQTLLRLQ HKKNPWEGIA YFPRMEAQQV QAALELESCV  60
THDMSEMQYS PVKSESNELQ HPLSVSCFEK KVNYECNQEP QKVSQTCPKS QPTATKERRK  120
RKRTRPSKNK EDVENQRMTH IAVERNRRRQ MNDHLSVLRS LMPPSYIQRG DQASIIGGAI  180
DFVKELEQLL QSLEAQKRTR KNEEGGGGGG SSSSSSSTML CKPPPPPLLL LSSPHGYGMR  240
SSPSDEVNCG DEVKAENKSE AADIKVTLIQ THVNLKIECQ RKPGQLLKVI VALEDLRLTI  300
LHLNITSSET SVLYSLNLKI EEDCKLCSAS DIAETVHQIF SFINGVARDH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRKRKR
2136147RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G017700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352930.0AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598867.10.0transcription factor bHLH57 isoform X3
RefseqXP_028205762.10.0transcription factor bHLH57-like isoform X2
TrEMBLA0A0R0FK060.0A0A0R0FK06_SOYBN; Uncharacterized protein
STRINGGLYMA16G02020.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-62bHLH family protein