PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G020500.1.p
Common NameGLYMA_16G020500, LOC100804965
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 467aa    MW: 51888.3 Da    PI: 6.3971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G020500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12288333454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Glyma.16G020500.1.p 288 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 333
                          799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4526200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.609284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-17285346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-14288338No hitNo description
PfamPF000109.2E-10288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16288344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-15290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSLSQE NPTPTLQQKL QFLLQSQPDW WVYAIFWQAS HDDNGNLYLS  60
FGEGHFQGTK ETSPKSLTIP TKNKFLMKTP TNDNINDAEW FYVMSLTRSF AVNNNSSSNS  120
TSCSSSSSSL PGKSFALGSV LWQNNRHELQ FYNCERSNEA HMHGIETLIC IPTQNGVVEM  180
GSYDTIKQNW NLVQHVKSLF HTSPDPVTVQ ILDDHIISFA DIGIVAGIQE TKKRKQITQT  240
APSKNDNYVD SEHSDSDCPT LPTATTPTAS EPKKRGRKPV LGRETPINHV EAERQRREKL  300
NHRFYALRAV VPNVSRMDKA SLLSDAVAYI NELKAKIEDL ESQQPRDSNK KMKTEMTDTL  360
DNQSATTTST VVDQSGSGSR LGLGPLGLEV DVRIVGPDAM VRVQSENVNH PGARLMGALR  420
DLEFQVHHAS MSCVNDLMLQ DVVVKLPNGM RSEESLKSAI IMRLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-27252018193Transcription factor MYC3
4rqw_B2e-27252018193Transcription factor MYC3
4rs9_A2e-27252018193Transcription factor MYC3
4yz6_A2e-27252018193Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G020500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937150.0BT093715.1 Soybean clone JCVI-FLGm-17N15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548195.10.0transcription factor MYC2
TrEMBLK7MER40.0K7MER4_SOYBN; Uncharacterized protein
STRINGGLYMA16G02320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-71bHLH family protein