PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G029000.1.p
Common NameGLYMA_16G029000, Glyma16g03190.1, LOC547789
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 425aa    MW: 45389.1 Da    PI: 8.4425
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G029000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.82e-22279341163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN +Lk+e+ +l++ ++++++e+
  Glyma.16G029000.1.p 279 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITRLTEGSEQMRMEN 341
                          89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-32196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.0E-25131258No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-16273338No hitNo description
SMARTSM003387.7E-22279343IPR004827Basic-leucine zipper domain
PfamPF001707.1E-21279341IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.116281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-11282337No hitNo description
CDDcd147021.60E-19284332No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGNSEEEKSV KTGSPSSSPA TTEQTNQPNI HVYPDWAAMQ YYGPRVNIPP YFNSAVASGH  60
APHPYMWGPP QPMMQPYGPP YAAFYSHGGV YTHPAVAIGP HSHGQGVPSS PAAGTPSSVE  120
SPTKFSGNTN QGLVKKLKGF DELAMSIGNC NAESAERGAE NRLSQSVDTE GSSDGSDGNT  180
AGANQTKRKR SREGTPITDA EGKTELQNGP ASKETASSKK IVSATPASVA GTLVGPVVSS  240
GMATALELRN PSTVHSKANS TSAAQPCAVV RNETWLQNER ELKRERRKQS NRESARRSRL  300
RKQAETEELA RKVEMLTAEN VSLKSEITRL TEGSEQMRME NSALREKLIN TQLGPREEIT  360
LSSIDSKRAA PVSTENLLSR VNNSGANDRT AENENDICEN KPNSGAKLHQ LLDTNPRANA  420
VAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.308590.0cotyledon| hypocotyl| leaf| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G029000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311410.0KT031141.1 Glycine max clone HN_CCL_141 BZIP transcription factor (Glyma16g03190.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341034.10.0G-box binding factor
SwissprotQ990891e-139CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLI1MKN50.0I1MKN5_SOYBN; BZIP transcription factor
STRINGGLYMA16G03190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-107G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Hong JC, et al.
    Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene.
    Plant J., 1995. 8(2): p. 199-211
    [PMID:7670504]
  4. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]