PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G031400.2.p
Common NameGLYMA_16G031400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 195aa    MW: 21935.7 Da    PI: 8.2211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G031400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29104161159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk++ +p sYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Glyma.16G031400.2.p 104 LDDGYRWRKYGQKAVKNNMHP-SYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 161
                          59******************9.9***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-3190161IPR003657WRKY domain
SuperFamilySSF1182901.96E-2596162IPR003657WRKY domain
PROSITE profilePS5081125.72999163IPR003657WRKY domain
SMARTSM007747.0E-34104162IPR003657WRKY domain
PfamPF031068.9E-23105161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MESQDPQNSP PFLFTPMSMM QNPNLEPQGL HDDIDWVSLF SGQSNFLADA NAMMECASSS  60
SSSSSSSCAL MAEKSDKETM KGGRLRKTTR PRFAFQTRSE DDILDDGYRW RKYGQKAVKN  120
NMHPSYYRCT HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLT PLLRQMQFLS  180
RLASNNNGGP SSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-2494160774Probable WRKY transcription factor 4
2lex_A6e-2494160774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G031400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548440.11e-138probable WRKY transcription factor 43
SwissprotQ8VWQ44e-55WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLI1MKR21e-145I1MKR2_SOYBN; Uncharacterized protein
STRINGGLYMA16G03480.21e-137(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.15e-57WRKY DNA-binding protein 56