PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G040000.2.p
Common NameGLYMA_16G040000, LOC100782886
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 226aa    MW: 24720.1 Da    PI: 4.523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G040000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.2e-082253255
                  AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                         +lg+f taeeAa+a+++a+  l+g
  Glyma.16G040000.2.p  2 WLGTFETAEEAARAYDEAACLLRG 25
                         9******************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.036133IPR001471AP2/ERF domain
CDDcd000181.11E-16132No hitNo description
Gene3DG3DSA:3.30.730.102.7E-14133IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-9133IPR016177DNA-binding domain
SMARTSM003804.0E-5139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFITHVSLDS PLASRIRNLL NNRKGVKKQE  60
DTNANANNAP APKVTTTRSA STCTSTSTST STSTSSNSSN GNDKNDKSLS TANTRSSNLF  120
DDAYKPDLSN CREEFESGHQ SNASWGFGTV FDRFPIAQIL DIPKIDDGLL TNAADLELSE  180
FERMKVERQI SASLYAINGV QEYMETVQDS NDTLWDLPPL CSMFC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G040000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-143AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548731.11e-166ethylene-responsive transcription factor ERN1
SwissprotA0A1X9PY881e-101ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A0R0FU291e-165A0A0R0FU29_SOYBN; Uncharacterized protein
TrEMBLK7MF451e-165K7MF45_SOYBN; Uncharacterized protein
STRINGGLYMA16G04410.11e-166(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-10related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]