PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G047600.2.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 261aa    MW: 28715.4 Da    PI: 6.6456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G047600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-204897255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++aa++k++g
  Glyma.16G047600.2.p 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 97
                         7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-3347106IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2248106IPR016177DNA-binding domain
CDDcd000182.36E-2248107No hitNo description
PfamPF008471.1E-134897IPR001471AP2/ERF domain
PROSITE profilePS5103225.26448105IPR001471AP2/ERF domain
SMARTSM003802.4E-3748111IPR001471AP2/ERF domain
PRINTSPR003671.4E-114960IPR001471AP2/ERF domain
PRINTSPR003671.4E-117187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MHPINTGDDS TLSSPIPQYG QISNSCLIET QDPSLQPLNQ GGNGRKRHYR GVRQRPWGKW  60
AAEIRDPKKA ARVWLGTFDT AEAAAAAYDA AALKFKGSKA KLNFPEHVLL PPPPISSSSP  120
PCNNNNNHHS YYYGSSALAP LAPPPQHVYD QTPPPQQQPL LSSSAQEEGF PNLMQYAQLL  180
WSRDDDDLQR IASGLHQHHH HNEAFYDSSS STLFSSTSTT YSMTVSDQQQ NIGDDTSTPK  240
GAEYNYGGCF FRGSDFHDKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2547108163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.372200.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G047600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931401e-159BT093140.1 Soybean clone JCVI-FLGm-22C2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548854.10.0ethylene-responsive transcription factor ERF113
TrEMBLI1ML940.0I1ML94_SOYBN; Uncharacterized protein
STRINGGLYMA16G05190.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-31ERF family protein