PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G069300.2.p
Common NameGLYMA_16G069300, LOC100794879
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 400aa    MW: 44665.5 Da    PI: 4.6312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G069300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-29561982128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                          p G++F+P+d el+ e+L++k+   +      +  +e+i++++    i++++P++Lp  +k++ + ++fF+++ ++yatg+rk+r+    
  Glyma.16G069300.2.p  56 PLGVKFDPSDVELL-EHLAAKCGIGNtkqhlfI--NEFIPTLEgdqgICYTHPENLP-GAKKDGNYVHFFHRTTNAYATGQRKRRKihhq 141
                          89************.999999877764444331..334444423344**********.556778999******************86777 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                               ++ +W++tgk+k++++ +g ++g kk++v y   +++ +k+ k++Wvmh+y+l
  Glyma.16G069300.2.p 142 qgltEEHVRWHKTGKTKAIIE-DGVHKGFKKIMVIYirsSENGSKPYKSNWVMHQYHL 198
                          777444788************.999***********544334445559********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3639217IPR003441NAC domain
PROSITE profilePS5100528.59955217IPR003441NAC domain
PfamPF023651.4E-1156198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MARSWLIDIG GFAKKVKSIT LSSADQIKDC GAYRECPNCS YHIDNSDVST EWPGFPLGVK  60
FDPSDVELLE HLAAKCGIGN TKQHLFINEF IPTLEGDQGI CYTHPENLPG AKKDGNYVHF  120
FHRTTNAYAT GQRKRRKIHH QQGLTEEHVR WHKTGKTKAI IEDGVHKGFK KIMVIYIRSS  180
ENGSKPYKSN WVMHQYHLGT EEDEKEAEYV VSKVFYQQQK QTEKNEDNPM AGDPANIISR  240
TSPRTPKPNP PNPPRTGKSV DCDDNIDETV LLSAALDTKT IPEGSLAPQS DIQDQDNTGD  300
AAWLAGESQA EENSEYDGLD DILLCNEILD SSALLNDSGL DYTNLDDIAS YATQRARNDN  360
EPCGISLLDT LELDTPDFDL SSLYFCSQDS SILDWMDRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.566920.0meristem| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G069300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599082.10.0SUPPRESSOR OF GAMMA RESPONSE 1
RefseqXP_006599083.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLK7MFL50.0K7MFL5_SOYBN; Uncharacterized protein
STRINGGLYMA16G07501.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.15e-91NAC domain containing protein 44