PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G071700.1.p

Common Name

GLYMA_16G071700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 181aa MW: 20005.6 Da PI: 8.1023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G071700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.7	1.2e-44	26	124	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Glyma.16G071700.1.p 26 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRL 115 7*************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++ + Glyma.16G071700.1.p 116 QKELDATSA 124 **98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.786	25	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-44	26	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSYPPINSKR FLVVKIMASS SYSNSPCAAC KFLRRKCMPD CIFAPYFPPE EPQKFANVHK 60 IFGASNVSKL LNEVQPHQRE DAVNSLAYEA EARIKDPVYG CVGAISVLQR QVIRLQKELD 120 ATSADLIRYT CNEMPTTTQD GRRIIGEGGG SSLGQSSGYY YPSPWNNDTL GDGYHRGDNI 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-67	23	134	8	119	LOB family transfactor Ramosa2.1
5ly0_B	3e-67	23	134	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.53058	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G071700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090839	1e-165	BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548568.1	1e-122	LOB domain-containing protein 25
Refseq	XP_014624042.1	1e-122	LOB domain-containing protein 25
Refseq	XP_014624043.1	1e-122	LOB domain-containing protein 25
Refseq	XP_014624044.1	1e-122	LOB domain-containing protein 25
Refseq	XP_028206945.1	1e-122	LOB domain-containing protein 25-like
Refseq	XP_028206946.1	1e-122	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	7e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A0R0FV53	1e-133	A0A0R0FV53_SOYBN; Uncharacterized protein
STRING	GLYMA16G07770.2	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-70	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Glyma.16G071700.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]