PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G132100.2.p
Common NameGLYMA_16G132100, LOC100781981
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 313aa    MW: 34371.5 Da    PI: 7.1072
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G132100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702194.73.1e-601092453154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 
                           g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqqql a+++++++++ +++ skr+r++           +l
  Glyma.16G132100.2.p 109 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLMALHQQQQEQQqQRDISKRPRDS-----------RL 187
                          5789*************************************************999866654433255566666653...........44 PP

               DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          ss+e     e  ++P+ vss+a frcvrvs v+d+++ +aYqtavsigGhvfkGiLyd+G+e+
  Glyma.16G132100.2.p 188 SSSE-----EEGHFPSVVSSPAEFRCVRVSCVEDSDDRYAYQTAVSIGGHVFKGILYDYGPEN 245
                          4443.....3467************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-63111244IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-27113155IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.0E-25195243IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAGLFSLVRG GDNQEENNNQ SSEIPPAETL FWYSKNDDVS SYHRGFELWN QHQEHQHHHH  60
AMHHPHARPL LQRDLYSSGV GPSRGGISDD HSSSRSAAFV AMRAAGAEGG GISCQDCGNQ  120
AKKDCPHMRC RTCCKSRGYD CQTHVKSTWV PASKRRERQQ QLMALHQQQQ EQQQQRDISK  180
RPRDSRLSSS EEEGHFPSVV SSPAEFRCVR VSCVEDSDDR YAYQTAVSIG GHVFKGILYD  240
YGPENSNNNN SNNNSNNYMA GETSAVAATA QPLNLAAAAS SAALIDPSSL YSAPANAFMA  300
GSGTQFFPHT RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G132100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624738.10.0protein SHI RELATED SEQUENCE 1
TrEMBLA0A0R0FQ570.0A0A0R0FQ57_SOYBN; Uncharacterized protein
STRINGGLYMA16G24510.31e-160(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.27e-55SHI-related sequence 7