PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G133200.1.p
Common NameGLYMA_16G133200, LOC100785177
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 387aa    MW: 42769.1 Da    PI: 8.9296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G133200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-052903271254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++++L++l+ +      +K s a++L +A+ YI+ L
  Glyma.16G133200.1.p 290 RKEKLGDRIQTLQRLVAPF-----GKTSTASVLSEAIGYIHFL 327
                          7788999*********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.585278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-5288332No hitNo description
SuperFamilySSF474591.96E-10288339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7292335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEFASFHLQQ HQLQEESAQF SIISTTPPPD SKPSTTITNQ SWIPSNMYNG YNSGFLTDQS  60
FTNSRELQHK HAMTDSLRIS TRQAFGFNNG KSLITQHPVG DNNSLFPARI FKGEMIDNTF  120
MKAMEESSLV PIHHEPRYSS PSFLSSIGVT VGEEFYPNDK PIDGGTPSKR YNNSFGDVAL  180
ISNLPTLDMA SSLVSCSLGL NPKMFDLHTS YGGSCGIQPG YDTFGINESI SLSHSYEHGR  240
ENSPSNSTSK ISSFVSEVAT TKRPSNCSPP KESEAKAKKS RPSCPPLKVR KEKLGDRIQT  300
LQRLVAPFGK TSTASVLSEA IGYIHFLHQQ IQTLSIPYMK SAQSKPSRVV QLDSNKVDRR  360
EFKPDLRSRG LCLVPLSYAS FIHRCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G133200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624011.10.0uncharacterized protein LOC100785177 isoform X2
RefseqXP_028206722.10.0uncharacterized protein LOC114390220 isoform X2
TrEMBLA0A0B2QZS60.0A0A0B2QZS6_GLYSO; Transcription factor bHLH110
TrEMBLK7MH480.0K7MH48_SOYBN; Uncharacterized protein
STRINGGLYMA16G24661.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Representative plantOGRP1021979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-36bHLH family protein