PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G138400.1.p
Common NameGLYMA_16G138400, LOC100778576
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 74aa    MW: 8739.67 Da    PI: 9.9994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G138400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07446344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +++ +a +++  +   +W  +a+++g  ++ +++k ++
  Glyma.16G138400.1.p  4 SWTPRQNKQFERALAKYDREtpdRWQNVANEVG--KSVEEVKRHY 46
                         7*****************88************8..9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.345154IPR017884SANT domain
SMARTSM007171.5E-6152IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-12357IPR009057Homeodomain-like
CDDcd001675.14E-5450No hitNo description
Gene3DG3DSA:1.10.10.601.3E-7456IPR009057Homeodomain-like
PfamPF002491.0E-5446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MASSWTPRQN KQFERALAKY DRETPDRWQN VANEVGKSVE EVKRHYEILK EDIRRIERGQ  60
VAFPYRTNNS NSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-245711179RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G138400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547982.13e-48protein RADIALIS-like 1
SwissprotQ1A1736e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0B2PPT57e-47A0A0B2PPT5_GLYSO; Uncharacterized protein
TrEMBLI1MNE77e-47I1MNE7_SOYBN; Uncharacterized protein
STRINGGLYMA16G25250.11e-47(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-27RAD-like 6