PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G145000.1.p

Common Name

GLYMA_16G145000, LOC778099

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 237aa MW: 24624 Da PI: 8.6883

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G145000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCds+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Glyma.16G145000.1.p 26 PENLPCPRCDSANTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 85 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	22	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MPSSNSGESR RASKPHRSVA APPVEPENLP CPRCDSANTK FCYYNNYNYS QPRHFCKSCR 60 RYWTHGGTLR DIPVGGGSRK NAKRSRTHHA AAATSSSSST SSATTSAHEH HNAHTLTALA 120 PVTAATHFGH DGDVKQTNGN ACGSYTSLLN NTQGSGFFAL GGFGLGLGHG FDDMGFGIGR 180 SGWAFPGMVD NGNIGGAIAS SGVNTWQLES GEGGFVGGDC FSWPGLAIST PGNGLK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28673	0.0	meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G145000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857251	7e-96	DQ857251.1 Glycine max Dof2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548014.1	1e-174	dof zinc finger protein DOF3.4
Refseq	XP_028206076.1	1e-174	dof zinc finger protein DOF3.4-like
Swissprot	Q39088	7e-58	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A445GIM2	1e-173	A0A445GIM2_GLYSO; Dof zinc finger protein DOF3.4
TrEMBL	I1MNL4	1e-173	I1MNL4_SOYBN; Uncharacterized protein
STRING	GLYMA16G26030.1	1e-173	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-50	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Glyma.16G145000.1.p
Entrez Gene	778099

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]