PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G152200.1.p
Common NameGLYMA_16G152200, LOC100789797
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 417aa    MW: 46867.7 Da    PI: 6.8837
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G152200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.9e-334599155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYR+
  Glyma.16G152200.1.p 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 99
                         79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.20142102IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-3143100IPR009057Homeodomain-like
SuperFamilySSF466899.5E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2345100IPR006447Myb domain, plants
PfamPF002493.8E-104798IPR001005SANT/Myb domain
PfamPF143791.5E-22146193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MYYQQQQQAK NMHALRMHSP TERHMMLQGG NGAGDPGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTVLKLM GIPGLTLYHL KSHLQKYRIS KNMHGQTNTS NNKIASTMEA  120
ATGISEASGV QMKHLSIGLQ TNKNSEINDA LQMQIEVQRR LHEQLEQVQR HLQLRIEAQG  180
KYLQAVLEKA QETLGRQNLG AEGVEAAKVQ LSELASRVSP QSLDSKFSEL KELQVLWPQQ  240
TQEGQATDCS MGSFLNYSEE SQRDRETHSM NLNLRACNGP PFSVSKGCAE ESMHLKPDYR  300
LCDEVKENMM FLSSSSNSKV VKGDFLSERP SSLLSMNVGV QEEENFGRTT VPKEEGWKRR  360
ESTETGRVPV KLNYEKISQD YRLANFDVKL DLNSHDDNDA SSHCQQFDLN GFSWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-2144101158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.237820.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G152200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599430.10.0myb-related protein 2 isoform X2
RefseqXP_028205820.10.0myb-related protein 2-like isoform X2
SwissprotQ9SQQ91e-126PHL9_ARATH; Myb-related protein 2
TrEMBLA0A445GIY70.0A0A445GIY7_GLYSO; Myb-related protein 2 isoform A
TrEMBLK7MHH80.0K7MHH8_SOYBN; Uncharacterized protein
STRINGGLYMA16G26820.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-128G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]