PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G182400.2.p

Common Name

GLYMA_16G182400, LOC100797708

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 883aa MW: 97637 Da PI: 7.0362

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G182400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.7	2.3e-28	471	520	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Glyma.16G182400.2.p 471 ISISLNVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 520 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.642	457	540	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-25	473	520	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.05E-21	781	867	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-25	782	863	No hit	No description
PROSITE profile	PS51745	23.082	782	864	IPR000270	PB1 domain
SMART	SM00666	1.1E-24	782	864	IPR000270	PB1 domain
Pfam	PF00564	3.2E-18	783	863	IPR000270	PB1 domain
CDD	cd06407	2.16E-34	783	863	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence Send to blast
MTASENPDGY CLIKERMTQA LRHFKELTEQ NVLAQVWAPV RNGNRYALTT SGQPFVLDPH 60 SNGLHQYRTA SLMYMFSVDG ENDEILGLPG RVFQHKIPEW TPNVQFYSSK EYQRLNHAQH 120 YNVRGTLALP VFELAGQSCV AVVELIMTSQ KINYAPEVDK ICKALEAVKL RSSEILEHPY 180 NQICNEYRQY ALAEILEILT AVCETHSLPL AQTWVPCKHR SVLAHGGGLK KICSSFNGCC 240 MGQVCMSITE VAFYVIDAHK WGFHEACAEH HLQQGQGVAG RAFLSHNMCF CGNNTQFCKT 300 EYPLVHYALM FHLNSCFAVC LQSSHTGNDD YVLEFFLPPG ITDFNEQKRL LGSILATMKP 360 HFQSLKIASG VELEGNASIE IIDARNERVH LRFESIPITQ SSKSPPRHTS PNMGEGLPLE 420 PSEPKIMAYF DGINDGGSLG DNAGGHIDQN TSLEIKTKKK PSDRKRGKAE ISISLNVLQH 480 YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NHSLSKLKCV IESVHGAEGA 540 FGLNSLSTGS LPIAAGSFSD PFTSNKFHRQ TTLTIRPSEP KINENDFDAF GASETKRQVA 600 MEDQFLGLEA RTRSPEKVIN DKGVSIQEIG TKGTNKFRTG SGSSGSGNPT HASCHGSPPN 660 EISPPKDTFV TGNSEQCLVL RGSLGSTTLH STSTPNRATA YPMLHIVETT EPQEPFGGQL 720 LEVAGSSKDL RNLCPSADAV LEDQVPEAYK MNPQCSDLPQ MQHMDTLNKT MTPFAVRKEV 780 NSVTIKATYK EDIIRFKVSM DCGIVELKEE IAKRLKLEVG TFHNKYLDDD HEWVLIACDA 840 DLQECMDISR SSGGNIIRLV VHDILPILGS SCESSRDWKG CI*

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence Send to blast

MTASENPDGY CLIKERMTQA LRHFKELTEQ NVLAQVWAPV RNGNRYALTT SGQPFVLDPH  60
SNGLHQYRTA SLMYMFSVDG ENDEILGLPG RVFQHKIPEW TPNVQFYSSK EYQRLNHAQH  120
YNVRGTLALP VFELAGQSCV AVVELIMTSQ KINYAPEVDK ICKALEAVKL RSSEILEHPY  180
NQICNEYRQY ALAEILEILT AVCETHSLPL AQTWVPCKHR SVLAHGGGLK KICSSFNGCC  240
MGQVCMSITE VAFYVIDAHK WGFHEACAEH HLQQGQGVAG RAFLSHNMCF CGNNTQFCKT  300
EYPLVHYALM FHLNSCFAVC LQSSHTGNDD YVLEFFLPPG ITDFNEQKRL LGSILATMKP  360
HFQSLKIASG VELEGNASIE IIDARNERVH LRFESIPITQ SSKSPPRHTS PNMGEGLPLE  420
PSEPKIMAYF DGINDGGSLG DNAGGHIDQN TSLEIKTKKK PSDRKRGKAE ISISLNVLQH  480
YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NHSLSKLKCV IESVHGAEGA  540
FGLNSLSTGS LPIAAGSFSD PFTSNKFHRQ TTLTIRPSEP KINENDFDAF GASETKRQVA  600
MEDQFLGLEA RTRSPEKVIN DKGVSIQEIG TKGTNKFRTG SGSSGSGNPT HASCHGSPPN  660
EISPPKDTFV TGNSEQCLVL RGSLGSTTLH STSTPNRATA YPMLHIVETT EPQEPFGGQL  720
LEVAGSSKDL RNLCPSADAV LEDQVPEAYK MNPQCSDLPQ MQHMDTLNKT MTPFAVRKEV  780
NSVTIKATYK EDIIRFKVSM DCGIVELKEE IAKRLKLEVG TFHNKYLDDD HEWVLIACDA  840
DLQECMDISR SSGGNIIRLV VHDILPILGS SCESSRDWKG CI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61763	0.0	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G182400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624671.1	0.0	protein NLP7 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0R0G322	0.0	A0A0R0G322_SOYBN; Uncharacterized protein
STRING	GLYMA16G30180.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Glyma.16G182400.2.p
Entrez Gene	100797708

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]