PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G189400.2.p
Common NameGLYMA_16G189400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 213aa    MW: 23990.4 Da    PI: 4.6183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G189400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.8e-133341548
                         HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Glyma.16G189400.2.p  3 LHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 34
                         69******.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.627138IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-17335IPR009057Homeodomain-like
SuperFamilySSF466891.25E-10340IPR009057Homeodomain-like
CDDcd001671.85E-8334No hitNo description
PfamPF002492.6E-11334IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVLHHMLGNK WSQIAQHLPG RTDNEIKNYW HSYLKKKEIK AKEMESDKEI QHASSSSDTM  60
ENSLSPQKLA TQDPSYSLLE NLDKSIAHND NFFSQSYNFS KEACQSSLPL PKLLFSEWLS  120
VDQVDGGSSV NSDDSLVLGN EFDQNSTFQE AIMHMLEENF GEEYHNSLIH SSTTEVYNSQ  180
LKSTNQVDGS DFINCIPGNE LCSNFSLTNH AM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201260.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G189400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548192.11e-154transcription factor LAF1
TrEMBLI1MPU41e-155I1MPU4_SOYBN; Uncharacterized protein
STRINGGLYMA16G31280.11e-154(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-18myb domain protein 19