PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G198800.1.p
Common NameGLYMA_16G198800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 670aa    MW: 73975.8 Da    PI: 8.2171
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G198800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.67.9e-25185238155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kp+++Wtp LH+rF+ a++q+ G ekA+Pktil++m+v+ Lt+e+v+SHLQkYR+
  Glyma.16G198800.1.p 185 KPKVVWTPYLHNRFLLAIKQI-GLEKAVPKTILQVMNVPNLTRENVASHLQKYRI 238
                          79*******************.********************************6 PP
2Response_reg67.56.1e-23111181108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+++ + ++ ++l++ gy +v +a ++  ale+l+e +  +Dl+++ + ++gm+G+e+ k  +++  +lp+i++++ g ++ + +
  Glyma.16G198800.1.p  11 VLVVDDDKTSLAIVSNILTSLGY-KVLTANSALNALEILREFRgfIDLLITELHISGMNGFEFQKYVENQF-HLPVIIMSSDGRNSVISK 98 
                          89*********************.*******************************************9999.9***************** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                           l  Ga  ++ Kpf+ ++  
  Glyma.16G198800.1.p  99 SLANGAAHYILKPFSADDFK 118
                          **************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004486.4E-239121IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.3E-289126No hitNo description
SuperFamilySSF521724.98E-2810126IPR011006CheY-like superfamily
PROSITE profilePS5011033.93410125IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2011119IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.37E-2412124No hitNo description
SuperFamilySSF466891.52E-17183242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-25184242IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-23185238IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MTHERVDIIS VLVVDDDKTS LAIVSNILTS LGYKVLTANS ALNALEILRE FRGFIDLLIT  60
ELHISGMNGF EFQKYVENQF HLPVIIMSSD GRNSVISKSL ANGAAHYILK PFSADDFKDI  120
WQYARKLTFQ NIEGGSIPGD NTSIQDVHSA ISSNVSKRKR KCFPRKSTQM NKEGQSGESS  180
TLVKKPKVVW TPYLHNRFLL AIKQIGLEKA VPKTILQVMN VPNLTRENVA SHLQKYRIFL  240
RKVADKGLLE GLSNRDLRSR FAYGLSASMI KDIQAKTAKS RVTAQQYMKR IAHQSVYGGI  300
ANAVKSYNHV SSVTNTPLGR SHQFPHPYHK GLNMMLHNQH GSSSDQARLR AQSSFGSNVG  360
TNNIQQNTLG SYANQPYYAQ SSYNNVGVVF PSDGVTRHGL MTSTNGLRGG VNYGGNQLMY  420
PNYASLGNQH KFSCGQGNWN IGSLNYNRSF GLINETSENV NKNVLSFGQG NFDLAQGGFA  480
STSSAGECWS KELPAENIQG NPTLHQQLQG NFAENDIGTS IGEGNVNLLD EDDFSNLFMM  540
LDEMDLLNET EENHNANDFL KSDFSSSNHA VQSLEQSYKA LTNYQATTDV IINPTKGTSN  600
LPNETSTSSD KNSNRLMGGD DGYANMEHLN SLYILNKSFG CQLTEGFIDK LNELCPTTVG  660
SLFFRLSHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21181244164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G198800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353840.0AC235384.1 Glycine max strain Williams 82 clone GM_WBb0112F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624277.10.0two-component response regulator ARR12
TrEMBLK7MIM30.0K7MIM3_SOYBN; Uncharacterized protein
STRINGGLYMA16G32311.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Representative plantOGRP1212546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-49response regulator 2