PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G199000.1.p
Common NameGLYMA_16G199000, LOC100819565
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 232aa    MW: 26248.6 Da    PI: 7.5953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G199000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1763113155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  + +Wv+e+r+p   +k++r++lg+f t+e+Aa+a++ a+ +l+g
  Glyma.16G199000.1.p  63 PVYRGVRRRN-TDKWVSEVREP---NKKTRIWLGTFPTPEMAARAHDVAAMALRG 113
                          68*****887.9******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1363113IPR001471AP2/ERF domain
PROSITE profilePS5103221.73364121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3064123IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2164123IPR016177DNA-binding domain
SMARTSM003805.4E-2864127IPR001471AP2/ERF domain
PRINTSPR003676.3E-86576IPR001471AP2/ERF domain
CDDcd000184.16E-2865123No hitNo description
PRINTSPR003676.3E-887103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYTLNHSSYL YHVSPELSSS LDSSSPASEG SRGVAFSDEE VRLAVRHPKK RAGRKKFRET  60
RHPVYRGVRR RNTDKWVSEV REPNKKTRIW LGTFPTPEMA ARAHDVAAMA LRGRYACLNF  120
ADSTWRLPIP ATANAKDIQK AAAEAAEAFR PSQTLENTNT KQECVKVVTT TTITEQKRGM  180
FYTEEEEQVL DMPELLRNMV LMSPTHCIGY EYEDADLDAQ DAEVSLWSFS I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194000.0flower| hypocotyl| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G199000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1654750.0HM165475.1 Glycine max cultivar Williams C-repeat/dehydration-responsive element-binding factor CBF1-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267504.11e-174AP2-lke DNA-binding domain-containing protein
RefseqXP_028206609.11e-174dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ932e-66DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A445GKS81e-173A0A445GKS8_GLYSO; Dehydration-responsive element-binding protein 1D
TrEMBLI1MQ271e-173I1MQ27_SOYBN; C-repeat/dehydration-responsive element-binding factor CBF1-2
STRINGGLYMA16G32330.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-50C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]