PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G023200.1.p

Common Name

GLYMA_17G023200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 193aa MW: 21247.8 Da PI: 10.0871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G023200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	46	89	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + f +L++ +P + + + i ++++YIk+L+ Glyma.17G023200.1.p 46 VERERRSKMTQMFTQLQTTVPGvL-----PQATREVIINETIKYIKELE 89 7*******************88.....678899*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.448	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0015	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-11	45	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-11	46	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.03E-5	46	89	No hit	No description
Pfam	PF00010	3.7E-5	46	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MAPLSQIPPS SSLHPSNIAE TGNIYTTTSR KRVKKMDHTN CESLNVERER RSKMTQMFTQ 60 LQTTVPGVLP QATREVIINE TIKYIKELEM KMQKLEELKE SMKEGSILLA CGNNNMNCSV 120 TVSVSANVAF FGIQSLPRSG LVSVIMKVFC KHRAEILAAN VSVNNGKLIL AITAMVQNGG 180 VVENIRRQIL SL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G023200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006600339.1	1e-139	uncharacterized protein LOC102663211
Refseq	XP_028208646.1	1e-139	uncharacterized protein LOC114391851
TrEMBL	A0A445G0R7	1e-137	A0A445G0R7_GLYSO; Uncharacterized protein
TrEMBL	K7MJK2	1e-137	K7MJK2_SOYBN; Uncharacterized protein
STRING	GLYMA17G02615.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14330	13	14
Representative plant	OGRP13847	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	6e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.17G023200.1.p