PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G024400.4.p
Common NameGLYMA_17G024400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 445aa    MW: 46253.7 Da    PI: 7.8294
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G024400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.1e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C yG rC+F+H++
  Glyma.17G024400.4.p 49 DEADCIYYLRTGFCGYGTRCRFNHPR 74
                         6799********************96 PP
2zf-CCCH36.11.1e-11103126427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C+++ +tG+Ck+G++CkF+H++
  Glyma.17G024400.4.p 103 KECSYYVKTGQCKFGATCKFHHPQ 126
                          79********************97 PP
3zf-CCCH36.39.3e-12267292227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +C+++H+p
  Glyma.17G024400.4.p 267 DQPECHHYMKTGECKFGLSCRYHHPP 292
                          689*********************97 PP
4zf-CCCH30.94.6e-10314338327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++C ++ + G Ck+G+ CkF H++
  Glyma.17G024400.4.p 314 APPCTHYTQRGVCKFGSACKFDHPM 338
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8544775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-64876IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826100127IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5101126IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9102126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4105125IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666265293IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9267292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5268294IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69311339IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7314338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6315341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5316336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT LAAGADAGLE ESSWQLGLAG AESYPMRPDE ADCIYYLRTG  60
FCGYGTRCRF NHPRDRAAVI GAAARTGGEF PERVGQPVCQ AEKECSYYVK TGQCKFGATC  120
KFHHPQPAGV QALAPSPVPP VSPLPVPVPS PMYPTVQIPS GPSQQQYGVL VARPPMLPGS  180
VVQGPYGPMV VSPAMVPFSG WSPYQAPATN PVLPSSNTSN AGSTQFYGIS QLPSSPATFT  240
GPYQPSGSSI GPSGASQKEH PFPERPDQPE CHHYMKTGEC KFGLSCRYHH PPDKSAPKAT  300
VTLSPVGLPL RPGAPPCTHY TQRGVCKFGS ACKFDHPMGS LSYSPSASSL ADMPVAPYPV  360
GSSIGTLAPS SSSSELRPEL GAGSNKESVA SRMSSMSTST GSVGMTLSSV GPISHSSTQP  420
SAQSSSSPAT TSATTSSTVS HTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331480.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G024400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-164AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550189.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_028211017.10.0zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-125C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0R0F6N80.0A0A0R0F6N8_SOYBN; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-116C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]