PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G030900.1.p
Common NameGLYMA_17G030900, LOC100789636
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 141aa    MW: 14425.2 Da    PI: 10.2206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G030900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.6e-193972134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  Glyma.17G030900.1.p 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 72
                         ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.1E-133384IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6113369IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-133373No hitNo description
Gene3DG3DSA:3.30.50.106.2E-163773IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.32E-133873No hitNo description
PfamPF003205.3E-173973IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403964IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVDPTGKGSE VEVEDSNSNP NAPSSGNSPS SNNEQKKTCA DCGTTKTPLW RGGPAGPKSL  60
CNACGIRSRK KKRAILGINK GSTEDGRKGK RTGGGGGIGG IGGGALGREV LLHRSHWKKL  120
GEEEKAAVLL MSLSYGSVYA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.597340.0vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G030900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0928361e-136BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550526.13e-96GATA transcription factor 16
RefseqXP_028209660.13e-96GATA transcription factor 16-like
SwissprotQ9FJ105e-36GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A445G1267e-95A0A445G126_GLYSO; GATA transcription factor 16
TrEMBLI1MRN57e-95I1MRN5_SOYBN; Uncharacterized protein
STRINGGLYMA17G03410.11e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-33GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]