PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G047300.1.p
Common NameGLYMA_17G047300, LOC732656
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 199aa    MW: 21809 Da    PI: 4.6568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G047300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-191866355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr +k +g+Wv+eIr p++   r+r++lg+++t+e+Aa+a +aa+ +l+g
  Glyma.17G047300.1.p 18 YKGVRKRK-WGKWVSEIRLPNS---RQRIWLGSYDTPEKAARAFDAAMFCLRG 66
                         9****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-211776IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-301775IPR001471AP2/ERF domain
SMARTSM003801.5E-321780IPR001471AP2/ERF domain
PROSITE profilePS5103222.3661774IPR001471AP2/ERF domain
CDDcd000182.73E-311876No hitNo description
PRINTSPR003671.2E-91829IPR001471AP2/ERF domain
PfamPF008476.5E-121866IPR001471AP2/ERF domain
PRINTSPR003671.2E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAKPSSEKPE EHSDSKYYKG VRKRKWGKWV SEIRLPNSRQ RIWLGSYDTP EKAARAFDAA  60
MFCLRGRNAK FNFPDNPPDI AGGTSMTPSQ IQIAAAQFAN AGPHEGHSGR PEHPPMESPS  120
PSVSEGTIQT DSDVPTLNGS VTDLFTPVGS SGYASDYGIF PGFDDFSGDF YVPEMPNVNY  180
GEENGEGFIV DESFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1418741572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268480.0cotyledon| flower| hypocotyl| leaf| root| seed coat
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO99832310.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G047300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2089690.0DQ208969.1 Glycine max dehydration-responsive element binding protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238500.11e-146dehydration-responsive element binding protein 3
RefseqXP_028209816.11e-146ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC24e-59ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A445G2F61e-145A0A445G2F6_GLYSO; Ethylene-responsive transcription factor ERF017
TrEMBLQ2VEU31e-145Q2VEU3_SOYBN; Dehydration-responsive element binding protein 3
STRINGGLYMA17G05240.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chen M, et al.
    Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.).
    J. Exp. Bot., 2009. 60(1): p. 121-35
    [PMID:18988621]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]