PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G051400.4.p
Common NameGLYMA_17G051400, LOC100777544
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 190aa    MW: 20509.1 Da    PI: 10.1138
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G051400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.7e-3349105158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Glyma.17G051400.4.p  49 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 105
                          57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-3647108IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.83448108IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.1E-255173IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-2851105IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605373IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.1E-2582105IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKPFLSNHTD SMYNCSQVGC SHPMNQQMVP QMLGLASTRI ALPVDLAEDG PIYVNAKQYH  60
GILRRRQSRA KLEAQNKLIK SRKPYLHESR HRHALNRVRG SGGRFLSAKQ LPQSNAELVT  120
DAYQKKDASE AENHPSSTGE NASITFTAIS ALTSMSSNSV NFPNMAGSSQ CSGGLTFGAG  180
ALQCTSVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2449110263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.289710.0flower| hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G051400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965760.0BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624790.11e-140nuclear transcription factor Y subunit A-19 isoform X2
RefseqXP_014624791.11e-140nuclear transcription factor Y subunit A-19 isoform X2
TrEMBLA0A0R0F7S61e-139A0A0R0F7S6_SOYBN; Uncharacterized protein
STRINGGLYMA17G05920.11e-133(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-38nuclear factor Y, subunit A5