PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G055200.1.p
Common NameGLYMA_17G055200, LOC100810698
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 323aa    MW: 36170.6 Da    PI: 10.0343
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G055200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19184217134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Glyma.17G055200.1.p 184 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 217
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.38E-13176218No hitNo description
PROSITE profilePS5011412.782178214IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-21178229IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-15182217IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.89E-15183215No hitNo description
PfamPF003203.2E-17184217IPR000679Zinc finger, GATA-type
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MIPAYRHSVS SVMPLDLNED QNHEFFSPTH HPSSSFSSLS SYPILFNPPN QDQEARSYYW  60
EPTKQYLPSH EEETEKIIPS SGSWDHSVAE SEHNKATVWK KAEERNENLE SVAAEDGSLK  120
WMPAKMRIMR KMLVSDQTDT YTNSDNNTTH KFDDQKQQLS SPLGTDNSSS NNYSNHSNNT  180
VRVCSDCHTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM AAAAASASGN GTVIVEAKKS  240
VKGRNKLQKK KEKKTRTEGA AQMKKKRKLG VGSAKASQSR NKFGFEDLTL RLRKNLAMHQ  300
VFPQDEKEAA ILLMALSYGL VH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248267KKKEKKTRTEGAAQMKKKRK
2263268KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.165990.0cotyledon| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G055200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550634.10.0GATA transcription factor 21 isoform X1
RefseqXP_028209244.10.0GATA transcription factor 21-like isoform X1
TrEMBLA0A445G2E70.0A0A445G2E7_GLYSO; Putative GATA transcription factor 22
TrEMBLI1MSH40.0I1MSH4_SOYBN; Uncharacterized protein
STRINGGLYMA17G06290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-32cytokinin-responsive gata factor 1