PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G057100.1.p

Common Name

GLYMA_17G057100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 321aa MW: 34822.4 Da PI: 10.3679

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G057100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.4	5.4e-32	242	300	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYegeH+h+ Glyma.17G057100.1.p 242 ADEYSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAQDDPNMLIVTYEGEHRHP 300 69***********************988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.8E-17	195	239	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.7E-33	229	302	IPR003657	WRKY domain
PROSITE profile	PS50811	32.041	236	302	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	239	302	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	241	301	IPR003657	WRKY domain
Pfam	PF03106	1.9E-27	243	300	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MAVDLANIRM EENMAIQEAA SAGLKSMEHL IRVLSSQIPS ASSSSSNAHH HRLNLNHLDC 60 AEITDFTVSK FKQVINLLNR TGHARFRRAP SHPSPSISPS QPQPQPQPQP QTLTLDFAKP 120 VMVKSNPNPN PSSTDLSVSQ YSKTKDTTTF SISPPMSTTT SSFLSSITAD GSVSDGKIGP 180 AILAAGKPPL SSSHRKRCHD ATLSAGKASS SAHCHCSKRR KSRVKRMIRV PAISSKIADI 240 PADEYSWRKY GQKPIKGSPY PRGYYKCSSV RGCPARKHVE RAQDDPNMLI VTYEGEHRHP 300 QPRLPETSAG AAADFVSQPV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-23	229	302	2	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22759	0.0	cotyledon\| hypocotyl\| leaf\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269\|PubMed:11722756}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G057100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098154	0.0	BT098154.1 Soybean clone JCVI-FLGm-12I3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237408.2	0.0	WRKY transcription factor 33
Swissprot	Q9SV15	1e-101	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	C6TKE5	0.0	C6TKE5_SOYBN; Uncharacterized protein
STRING	GLYMA17G06450.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1314	34	98
Representative plant	OGRP3557	11	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	1e-87	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Glyma.17G057100.1.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]