PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G058600.2.p
Common NameGLYMA_17G058600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 256aa    MW: 29537.2 Da    PI: 6.9803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G058600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.6e-14152195755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+eYI++L+
  Glyma.17G058600.2.p 152 VSERNRRKKLNDRLFALRAVVPNI-----TKMDKASIIKDAIEYIQHLH 195
                          57*********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-17144209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.202145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-12148199No hitNo description
Gene3DG3DSA:4.10.280.104.0E-17151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-12152194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDVSRKQQIK HRKQRERERE SMTDEQQHQF PSSMVSSPLY IHIYHAEVEN KSEENRPKIE  60
RKRNTKTLAH HILYSLTWIV NSANELLPFK LTMENIGEEY GYWPENDMLF QNEDLGSWAI  120
MDEAALSGSG YYDSSSPDGT GASSSVASKN IVSERNRRKK LNDRLFALRA VVPNITKMDK  180
ASIIKDAIEY IQHLHDQEKR IQAEILDLES GNKLKNPTYE FDQDLPILLR SKKKRTEQLF  240
GSVSSRNSPI EIIDV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G058600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932130.0BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625645.11e-175transcription factor bHLH35 isoform X2
SwissprotQ700E34e-40BH027_ARATH; Transcription factor bHLH27
TrEMBLI1MSK80.0I1MSK8_SOYBN; Uncharacterized protein
TrEMBLI1MSK90.0I1MSK9_SOYBN; Uncharacterized protein
STRINGGLYMA17G06610.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.49e-34bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]