PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G090500.1.p
Common NameGLYMA_17G090500, LOC100787505
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 162aa    MW: 18199.1 Da    PI: 9.4916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G090500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-101767655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         + +Er+RR +++s  ++L + +P+++  +sk  ls  + L +A  YIk+L+
  Glyma.17G090500.1.p 17 KTIERNRRIHMKSLCFKLVSTIPSNYLKTSKDmLSQQDQLHLAATYIKHLR 67
                         689*********************664555555****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-9478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-4971No hitNo description
PROSITE profilePS508889.1781166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-81680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-61766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKNTNTNTSG SPKLDRKTIE RNRRIHMKSL CFKLVSTIPS NYLKTSKDML SQQDQLHLAA  60
TYIKHLRERI EKLKGEKEKA MNMMMMSNQS NNRIFNTGSE LPLLEIKDLG SGIEVMLISG  120
LNKNFMLYEV ISVLEEEGAE VVAANFSTVA DKIFLHVSCS G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387550.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G090500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959830.0BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239892.11e-116uncharacterized protein LOC100787505
TrEMBLC6TEG01e-115C6TEG0_SOYBN; Uncharacterized protein
STRINGGLYMA17G09810.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-17bHLH family protein