PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G100000.1.p
Common NameGLYMA_17G100000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 80aa    MW: 8531.66 Da    PI: 8.8534
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G100000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer963.1e-302175358
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                         ++rY eC+kNhAa++Gg+avDGC+Efm+s   egt aal+CaACgCHRnFH+rev 
  Glyma.17G100000.1.p 21 NIRYGECQKNHAANTGGYAVDGCREFMAS-ACEGTNAALTCAACGCHRNFHKREVL 75
                         689*************************9.8889*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-21174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-282274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-242374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.6952473IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MKKRQVVVKR DYATSSPAVG NIRYGECQKN HAANTGGYAV DGCREFMASA CEGTNAALTC  60
AACGCHRNFH KREVLHGVN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.568711e-134hypocotyl| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G100000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352461e-131AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.
GenBankBT0965161e-131BT096516.1 Soybean clone JCVI-FLGm-9P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351505.17e-53mini zinc finger protein
SwissprotQ2Q4933e-28MIF3_ARATH; Mini zinc finger protein 3
TrEMBLA0A445G4R62e-51A0A445G4R6_GLYSO; Mini zinc finger protein 3
TrEMBLC6TFX22e-51C6TFX2_SOYBN; Uncharacterized protein
STRINGGLYMA17G10830.13e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.11e-30mini zinc finger