PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G124100.1.p
Common NameGLYMA_17G124100, LOC100800716
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 252aa    MW: 28354.4 Da    PI: 9.2198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G124100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-1592141255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ GVr+++ +grW AeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Glyma.17G124100.1.p  92 KFLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 141
                          789******.7*********42...36**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-3091151No hitNo description
PROSITE profilePS5103219.7392149IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1992150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-2792150IPR001471AP2/ERF domain
SMARTSM003803.4E-3292155IPR001471AP2/ERF domain
PfamPF008476.6E-1093141IPR001471AP2/ERF domain
PRINTSPR003677.3E-793104IPR001471AP2/ERF domain
PRINTSPR003677.3E-7115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPLPHHRPHC YIKGFITHQC SPSSHIYAKI QPNPFFFLPT LMENIDTSKF SHQSQNQNKN  60
NIPLMSIEIL DKSYEKRVVN KVPKVANKSE KKFLGVRQRP SGRWIAEIKD SSQKLRLWLG  120
TFDKAEEAAL AYDCAARLLR GRNAKTNFPN NPGIMNTTHE EDCSILGKNP RAYQLLKHAV  180
MKNNHALYST VMPWKNQIMV RDEFDTLVEE TIVCSIPEQG SGCCGISFGS SKVYSSVVVA  240
PSFSASHDET S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1591149160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1591149463ATERF1
3gcc_A3e-1591149463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G124100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968630.0BT096863.1 Soybean clone JCVI-FLGm-15D24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210113.10.0ethylene-responsive transcription factor ERF084-like
TrEMBLA0A0R0FBW60.0A0A0R0FBW6_SOYBN; Uncharacterized protein
TrEMBLA0A445G5V80.0A0A445G5V8_GLYSO; Ethylene-responsive transcription factor RAP2-11
STRINGGLYMA17G13320.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11