PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.17G126800.2.p

Common Name

GLYMA_17G126800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 473aa MW: 51014.2 Da PI: 4.6894

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.17G126800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.8e-09	157	179	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+ +tG Ck+G +CkF+H+ Glyma.17G126800.2.p 157 EDCAFYIKTGNCKFGFNCKFNHP 179 89********************8 PP
2	zf-CCCH	28.3	3e-09	203	225	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G +Ck++H Glyma.17G126800.2.p 203 MTECKYYQRSGGCKFGKSCKYNH 225 679******************** PP
3	zf-CCCH	42	1.5e-13	250	274	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Ck+G++CkF+H+ Glyma.17G126800.2.p 250 GERECPYYMRTGSCKFGANCKFNHP 274 5799********************9 PP
4	zf-CCCH	30	8.6e-10	387	413	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Glyma.17G126800.2.p 387 PGEPECSYFLKTGDCKFKSNCKFNHPK 413 5799*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.44E-5	152	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0052	153	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.873	153	181	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-6	157	179	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.4E-5	200	227	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.845	200	228	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-7	202	225	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-5	203	230	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-4	206	227	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-6	248	275	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.46	248	276	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	249	275	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-11	250	274	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-5	254	273	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-4	386	413	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.004	386	414	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-7	388	413	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	391	415	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGGSESVSVP LSISNGEEPQ LGASSSPAAP PEPSDLNHAA EEEALSRELQ SKLDLKDGDE 60 SEERVSDLND GRGVCDEETG KPDGDSRGWE TNSWNEEVGV DAEVHVFGDG DVHDAGDGDV 120 HDVGDGDVDV DVDDEVEKKE GGNSGLAQHY PLRPEAEDCA FYIKTGNCKF GFNCKFNHPI 180 RRKSQAVKEK AGEREETTER SGMTECKYYQ RSGGCKFGKS CKYNHTRGKI STAPAPLLEL 240 NFLGLPIRLG ERECPYYMRT GSCKFGANCK FNHPDPTAVG GVGGDPASGY GNGGSISLQG 300 VSQTSVPSWS SPRTLNESSP FVPMMLSPTQ GVSTQSSDWN GYQASVYLPE RNMHPPSTFV 360 MNNPAIDTNV YMHHQKQMPV DEFPERPGEP ECSYFLKTGD CKFKSNCKFN HPKNRVARLP 420 PCNLSDKGLP LRPPVMIPGL GQQSYSNSAS VEVAGIFGST GVVTDATIQQ SV*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGGSESVSVP LSISNGEEPQ LGASSSPAAP PEPSDLNHAA EEEALSRELQ SKLDLKDGDE  60
SEERVSDLND GRGVCDEETG KPDGDSRGWE TNSWNEEVGV DAEVHVFGDG DVHDAGDGDV  120
HDVGDGDVDV DVDDEVEKKE GGNSGLAQHY PLRPEAEDCA FYIKTGNCKF GFNCKFNHPI  180
RRKSQAVKEK AGEREETTER SGMTECKYYQ RSGGCKFGKS CKYNHTRGKI STAPAPLLEL  240
NFLGLPIRLG ERECPYYMRT GSCKFGANCK FNHPDPTAVG GVGGDPASGY GNGGSISLQG  300
VSQTSVPSWS SPRTLNESSP FVPMMLSPTQ GVSTQSSDWN GYQASVYLPE RNMHPPSTFV  360
MNNPAIDTNV YMHHQKQMPV DEFPERPGEP ECSYFLKTGD CKFKSNCKFN HPKNRVARLP  420
PCNLSDKGLP LRPPVMIPGL GQQSYSNSAS VEVAGIFGST GVVTDATIQQ SV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5194	0.0	hypocotyl\| root\| seed coat\| somatic embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.17G126800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549835.1	0.0	zinc finger CCCH domain-containing protein 67
Refseq	XP_028210765.1	0.0	zinc finger CCCH domain-containing protein 67-like
Swissprot	Q9STM4	1e-116	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	I1MUL5	0.0	I1MUL5_SOYBN; Uncharacterized protein
STRING	GLYMA17G13580.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-118	C3H family protein

Link Out ? help Back to Top
Phytozome	Glyma.17G126800.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]