PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G131900.1.p
Common NameGLYMA_17G131900, LOC100779318
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 256aa    MW: 28260.6 Da    PI: 6.7772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G131900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1965116155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +++Wv+e+r+p   + k++r++lg++ t+e+Aa+a++ a+++l+g
  Glyma.17G131900.1.p  65 PVYRGVRRRN-NNKWVCEVRVP---NdKSTRIWLGTYPTPEMAARAHDVAALSLRG 116
                          68*****887.8*********9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-1465116IPR001471AP2/ERF domain
SMARTSM003802.5E-2466130IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2166126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-3066126IPR001471AP2/ERF domain
PROSITE profilePS5103222.06266124IPR001471AP2/ERF domain
PRINTSPR003672.0E-76778IPR001471AP2/ERF domain
CDDcd000181.02E-2667126No hitNo description
PRINTSPR003672.0E-790106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNILGQSLHQ SNNGSYSCSS PETANSSNLP TTPKAVHSDE EVNTLASAHP KKRAGRRIFK  60
ETRHPVYRGV RRRNNNKWVC EVRVPNDKST RIWLGTYPTP EMAARAHDVA ALSLRGKSAC  120
LNFADSAWRL PLPASTNAKE IRRVAAAAAV AIAAEDSRGK QLRTNAIDAV ADCEVSSSDI  180
GVDENCNNNK ASQRFCDLDE ITMPDAPVFE DMHEWLQTMA AEPLRSPTFV TYVNVRDVWN  240
FVEDDAEVSL WSFTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G131900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550880.10.0dehydration-responsive element-binding protein 1E
TrEMBLK7MLG20.0K7MLG2_SOYBN; Uncharacterized protein
STRINGGLYMA17G14111.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-49C-repeat/DRE binding factor 2