PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G132600.1.p
Common NameGLYMA_17G132600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 293aa    MW: 33080.3 Da    PI: 6.7234
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G132600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-082372702154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Glyma.17G132600.1.p 237 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 270
                          469*****************************87 PP
2ELK25.53e-09191212122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Glyma.17G132600.1.p 191 ELKIELKQGFKSRIEDVREEIL 212
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.8E-182569IPR005540KNOX1
PfamPF037904.6E-172768IPR005540KNOX1
SMARTSM012563.2E-2580135IPR005541KNOX2
PfamPF037911.6E-1883134IPR005541KNOX2
PROSITE profilePS512139.132191211IPR005539ELK domain
PROSITE profilePS5007111.645211274IPR001356Homeobox domain
SMARTSM003893.4E-11213278IPR001356Homeobox domain
SuperFamilySSF466893.17E-16213278IPR009057Homeodomain-like
CDDcd000861.13E-11214275No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25218276IPR009057Homeodomain-like
PfamPF059201.0E-17231270IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQEAGLGMGM GMMSGEVSAA GDHHRQVKAE IANHPLYEQL LSAHVSCLRV ATPIDQLPLI  60
DGQLSQSHHL LRSYASHHSH SLSPHDRQEL DNFMAQYLIV LCTFKEQLQQ HVRVHAVEAV  120
MACRDIESTL QALTGVSLGE GTGATMSDDE DDLQMDGSLD QSSADGHDMM GFGPLLPTES  180
ERSLMERVRQ ELKIELKQGF KSRIEDVREE ILRKRRAGKL PGDTTSVLKA WWQQHAKWPY  240
PTEDDKAKLV EETGLQLKQI NNWFINQRKR NWHSNSQSVN SLKSKRKREY AH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13214270864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267287RKRNWHSNSQSVNSLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.556080.0hypocotyl| leaf| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G132600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939000.0BT093900.1 Soybean clone JCVI-FLGm-17N4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242278.20.0homeobox protein knotted-1-like 7-like
RefseqXP_028208901.10.0homeobox protein HD1-like
SwissprotQ9FPQ81e-165KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0R4J5J40.0A0A0R4J5J4_SOYBN; Uncharacterized protein
TrEMBLA0A445G6970.0A0A445G697_GLYSO; Homeobox protein knotted-1-like 7 isoform A
STRINGGLYMA17G14180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-164KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]