PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G143900.1.p
Common NameGLYMA_17G143900, LOC100812293
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 233aa    MW: 25378.1 Da    PI: 5.9007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G143900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1761110255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Glyma.17G143900.1.p  61 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 110
                          69****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-2161119IPR016177DNA-binding domain
PROSITE profilePS5103223.02461118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3161119IPR001471AP2/ERF domain
PfamPF008479.8E-1261110IPR001471AP2/ERF domain
SMARTSM003803.5E-3661124IPR001471AP2/ERF domain
CDDcd000183.65E-3062120No hitNo description
PRINTSPR003676.7E-106273IPR001471AP2/ERF domain
PRINTSPR003676.7E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVMEESNPLD NEVQPTTSSS SFTITTPSTS SSSSIEEATN TTTKEKKKKR AISNIEGKHP  60
TYRGVRMRQW GKWVSEIREP RKKSRIWLGT FPTPDMAARA HDVAALTIKG SSAYLNFPEL  120
AAKLPRPAST SPKDIQAAAA KASALDFGHQ SHEAESELSQ AVSSSIQTQS SSSSSNSSLK  180
GVDDTFLDLP DLSLDLSHGA DEFHYSSAWL VAGAEHIELG FRLEEPFLWE SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1754118772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.254220.0hypocotyl| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G143900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5511660.0EF551166.1 Glycine max dehydration-responsive element binding protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549925.11e-169ethylene-responsive transcription factor ERF039
RefseqXP_028209618.11e-169ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-56ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0R0FM211e-168A0A0R0FM21_SOYBN; Uncharacterized protein
TrEMBLA0A445G6Q41e-168A0A445G6Q4_GLYSO; Ethylene-responsive transcription factor ERF034
STRINGGLYMA17G15310.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]