PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G154800.3.p
Common NameGLYMA_17G154800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LSD
Protein Properties Length: 107aa    MW: 10840.8 Da    PI: 6.4329
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G154800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.16.2e-132852125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lL +P GA+sV+Ca+C++V
  Glyma.17G154800.3.p 28 CSGCRNLLVFPVGATSVCCAVCNAV 52
                         ************************9 PP
2zf-LSD147.52.9e-156791125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         CggC+tlL+Y rGA+sV+C++C+tV
  Glyma.17G154800.3.p 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                         ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-122555IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-102852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.0E-156493IPR005735Zinc finger, LSD1-type
PfamPF069437.8E-136791IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAN GVQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEGIVV LIVSEV*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G154800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-141BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237533.11e-62uncharacterized protein LOC100306356
RefseqXP_003549982.11e-62protein LOL1
RefseqXP_028208959.11e-62protein LOL1
RefseqXP_028232260.11e-62protein LOL1
SwissprotQ93ZB14e-48LOL1_ARATH; Protein LOL1
TrEMBLI1MVE42e-67I1MVE4_SOYBN; Uncharacterized protein
STRINGGLYMA05G23710.14e-62(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-34lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]